Featured

Phylogenetic

Software

Relevance Popularity Rating

MEGA

free

3,141

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic...

manual sequence alignment, inferring phylogenetic trees, mining web-based

Geneious

2,083

Biomatters Ltd.

Geneious is a research tool designed for biologists and not computer...

Geneious is a research tool designed for biologists and not computer scientists

CLC Sequence Viewer

free

1,964

QIAGEN

CLC Sequence Viewer features Full integration of data input, data management...

interactive restriction site analysis, phylogenetics, or advanced

TreeView

free

1,962

Roderic D. M. Page

TreeView is a program to view phylogenetic trees in your computer. It can read and display...

to view phylogenetic trees in your computer. A phylogenetic

TreeView X

free

1,578

Roderic D. M. Page

TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms...

source program to display phylogenetic trees on Linux, Unix

CLC Main Workbench

1,108

CLC bio, a QIAGEN Company.

CLC Main Workbench can be used for DNA, RNA, and protein sequence...

primer design, molecular cloning, phylogenetic analyses, etc

Mesquite

free

402

Mesquite Project

Mesquite is modular, extendible application for evolutionary biology, designed to help biologists...

emphasis is on phylogenetic analysis ...others do non-phylogenetic multivariate analysis. Mesquite

Dendroscope

free

310

Daniel H. Huson

Dendroscope is a platform-independent app written in Java...

enables conveniently to browse phylogenetic trees and networks

SplitsTree4

free

127

Center for Bioinformatics Tübingen

Given an alignment of sequences, a distance matrix or a set of trees, the program will compute...

for computing unrooted phylogenetic networks...will compute a phylogenetic tree or network

PaupUp

free

Jean-Francois Martin

PauUP program was developed to provide a user-friendly interface to the phylogenetic program PAUP* on Windows operating...

friendly interface to the phylogenetic program PAUP*

GelCompar II

Applied Maths NV

GelCompar II is a program that makes it possible to link multiple electrophoresis...

of advanced features, including phylogenetic and dimensioning algorithms, group

NeXplorer

free

astoltzfus, vivekgopalan

Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data...

Nexplorer is a web-based phylogenetic browser

Open DELTA Suite

free

moyesyside

The DELTA system is a flexible data-coding format for taxonomic descriptions, and an associated set of programs...

to formats required for phylogenetic and phenetic

EZEditor

free

Chunlab Inc.

EzEditor is a Java-based sequence alignment editor allowing manipulation...

sequence alignments for phylogenetic analysis...alignment and subsequent phylogenetic

TreeMe

SequentiX - Digital DNA Processing

TreeMe allows visualization, editing, and annotation of large phylogenetic...

and annotation of large phylogenetic trees

Phylogenetic

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